bioseqdb

We have hosted the application bioseqdb in order to run this application in our online workstations with Wine or directly.

Quick description about bioseqdb:

BioseqDB is a PostgreSQL extension for storing, indexing and searching biological sequences with SQL. Combine genomic matches with relational data using compact sequence types and columnar storage.

Choose bounded ntHash or other minimizers, SIMD-DP or RMQ chaining, and Block Aligner or KSW2 alignment. Minimizer indexes cover fragments or whole sequences. Packaged defaults enable vectorization and column caching; the automatically loaded query cache is disabled until explicitly enabled.

Experimental, unsigned alpha packages are provided for ARM64 and x86-64 Linux. Choose the matching distribution and PostgreSQL major. Published packages pass payload checks and fresh installed-SQL checks. Prerelease/development PostgreSQL packages are labelled separately.

Documentation: https: //bioseqdb.com/
Source: https: //github.com/styczynski/bioseqdb .


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