universalmer

We have hosted the application universalmer in order to run this application in our online workstations with Wine or directly.

Quick description about universalmer:

UniversalMer is a k-mer counting tool for multiple size of k at once. It is available for DNA, RNA, and protein sequences. The program counts and summarizes the exact frequency of all k-mers from 1-mer to a user-defined maximum length (kmax). Analyzing the k-mer spectrum across multiple values of k can be done in seconds. This program is designed for bioinformatics researchers and scientists.

Features:

• Counting k-mers with multiple k's value at once.
• Counting 1-mers to kmax specified by user.
• Counting large k-mers in practical time
• Support k limit up to any sizes
• Finding maximum length of repeat patterns
• Support DNA sequences, RNA sequences, and proteins sequences.
• Practical running time and memory usage
• Show spectrum of 1-mers to kmax-mers within seconds
• Dumping 1-mers to kmax-mers patterns within seconds
• Enable configuring minimum frequency for counting
• Separating singleton k-mers from repeats k-mers

Audience: Science/Research, Engineering.
User interface: Console/Terminal, Command-line.
Programming Language: C++, C.
Categories: